The use of residual dipolar coupling for conformational analysis of structurally related natural products

The authors would like to acknowledge the EPSRC for funding.Determining the conformational preferences of molecules in solution remains a considerable challenge. Recently, the use of residual dipolar coupling (RDC) analysis has emerged as a key method to address this. Whilst to date the majority of the applications have focused on biomolecules including proteins and DNA, the use of RDCs for studying small molecules is gaining popularity. Having said that, the method continues to develop and here we describe an early case study of the quantification of conformer populations in small molecules using RDC analysis. Having been inspired to study conformational preferences by unexpected differences in the NMR spectra and the reactivity of related natural products, we showed that the use of more established techniques was unsatisfactory in explaining the experimental observations. The use of RDCs provided an improved understanding which, following use of methods to quantify conformer populations using RDCs, culminated in a rationalisation of the contrasting diastereoselectivities observed in a ketone reduction reactionPostprintPeer reviewe

Metal triflates for the production of aromatics from lignin

This work was funded by the European Union (Marie Curie ITN ‘SuBiCat’ PITN-GA-2013-607044, PJD, CWL, NJW, PCKL, KB, JGdeV) as well as EP/J018139/1, EP/K00445X/1 grants (NJW and PCJK) and an EPSRC Doctoral Prize Fellowship (CSL).The depolymerization of lignin into valuable aromatic chemicals is one of the key goals towards establishing economically viable biorefineries. In this contribution we present a simple approach for converting lignin to aromatic monomers in high yields, under mild reaction conditions. The methodology relies on the use of catalytic amounts of easy to handle metal triflates (M(OTf)x). Initially, we evaluated the reactivity of a broad range of metal triflates using simple lignin model compounds. More advanced lignin model compounds were also used to study the reactivity of different lignin linkages. The product aromatic monomers were either phenolic C2-acetals obtained by stabilization of the aldehyde cleavage products by reaction with ethylene glycol, or methyl aromatics obtained by catalytic decarbonylation. Notably, when the former method was ultimately tested on lignin, especially Fe(OTf)3 proved very effective and the phenolic C2-acetal products were obtained in an excellent, 19.3±3.2 wt % yield.PostprintPeer reviewe

Ribe na početku života

This work was supported by EPSRC (grants EP/J018139/1, EP/K00445X/1 (NJW), the EPSRC funded CRITICAT Centre for Doctoral Training (Ph.D. studentship to IP; EP/L016419/1) and EPSRC Doctoral Prize Fellowship (CSL)A new method has been developed to enable the modification of the organosolv technical lignin. Using a walnut shell butanol alkoxasolv lignin as a source of high β-O-4 content material, the β-O-4 γ-position has been selectively modified via tosylation, azidation and copper-catalyzed azide-alkyne triazole formation . In addition, extensive model studies were used to aid the detailed characterization of the modified lignin structure. The copper catalyzed click reaction was used to attach modified PEG chains and the resulting lignin-based co-polymer displayed improved thermal stability. This protocol was also used to incorporate a novel BODIPY-type fluorophore, generating a fluorescent lignin. Copper catalytic loadings were effective as low as 0.3 weight% and were found to catalyze the cycloaddition efficiently. This efficient and generic approach to preparing lignin-derived polymers is relevant to the core societal challenge of improving biorefinery efficiency.PostprintPeer reviewe

The synthesis and analysis of lignin-bound Hibbert ketone structures in technical lignins

This work was supported by EPSRC Ph.D. studentships (EP/1518175 (DMB), EP/1517938 (AN)), the Industrial Biotechnology Innovation Centre (Ph.D. studentship to DMB), CRITICAT Centre for Doctoral Training (Ph.D. studentship to IP; EP/L016419/1), EPSRC grants EP/J018139/1 and EP/K00445X/1 (SOJO) and an EPSRC Doctoral Prize Fellowship (CSL).Understanding the structure of technical lignins resulting from acid-catalysed treatment of lignocellulosic biomass is important for their future applications. Here we report an investigation into the fate of lignin under acidic aqueous organosolv conditions. In particular we examine in detail the formation and reactivity of non-native Hibbert ketone structures found in isolated organosolv lignins from both Douglas fir and beech woods. Through the use of model compounds combined with HSQC, HMBC and HSQC-TOCSY NMR experiments we demonstrate that, depending on the lignin source, both S and G lignin-bound Hibbert ketone units can be present. We also show that these units can serve as a source of novel mono-aromatic compounds following an additional lignin depolymerisation reaction.PostprintPeer reviewe

Total synthesis of dehaloperophoramidine using a highly diastereoselective Hosomi-Sakurai reaction

The authors would like to acknowledge EPSRC for PhD funding through the Doctoral Training Schemes.The synthesis of dehaloperophoramidine, a non-halogenated derivative of the marine natural product perophoramidine, is reported. The key steps included a [3,3]-Claisen rearrangement and an epoxide opening/allylsilylation (modified Hosomi-Sakurai) reaction to install the contiguous all-carbon quaternary stereocentres with the required relative stereochemistry. The first five steps were carried out on seventy gram scale without the need for chromatography. Resolution of the [3,3]-Claisen product gave samples of the highly enantiomerically-enriched ketones which are flexible starting points for the synthesis of a number of complex ring structures. A regio- and diastereo-selective iodocyclisation was then used to differentiate between two allyl groups enabling the synthesis of the target molecule by two different routes. A detailed comparison of the trifluoroacetic acid salt of the synthetic dehaloperophoramidine with authentic material was carried out including a key doping experiment. Biological testing showed that (±)-dehaloperophoramidine was cytotoxic to HCT116, HT29 and LoVo colorectal carcinoma cells with comparable activity to that reported for the halogenated perophoramidine. This demonstrated for the first time that the halogens are not essential for the biological activity of this alkaloid class.Publisher PDFPeer reviewe

The synthesis and analysis of advanced lignin model polymers

This work was funded by the EP/J018139/1, EP/K00445X/1 grants and an EPSRC Doctoral Prize Fellowship.If the lignin-first biorefinery concept becomes reality, high quality lignins close in structure to native lignins will become available in large quantities. One potential way to utilise this renewable material is through depolymerisation to aromatic chemicals. This will require the development of new chemical methods. Here, we report the synthesis and characterisation of advanced lignin model polymers to be used as tools to develop these methods. The controlled incorporation of the major linkages in lignin is demonstrated to give complex hardwood and softwood lignin model polymers. These polymers have been characterised by 2D HSQC NMR and GPC analysis and have been compared to isolated lignins.Publisher PDFPeer reviewe

Using molecular oxygen in synthesis : applications in lignin valorisation and natural product synthesis

The first part of this thesis describes my research towards the valorisation of lignin. Due to environmental and political pressures, there has been a drive to start the transition from a fossil fuel based economy to a renewable based one. This will require the development of novel routes to renewable chemicals, one source of which may be the biopolymer lignin. Through the synthesis of advanced lignin model compounds, the chemistry of real lignin is explored. This work culminates in the development of a novel method for the depolymerisation of real lignin to simple mixtures of aromatic chemicals that could be useful building blocks for the chemical industry. One of the key steps in this process is the oxidation of the β-O-4 linkages in lignin using catalytic amounts of DDQ and molecular oxygen as the terminal oxidant. The second part of this thesis details the first synthesis of melohenine B and O-ethyl-14-epimelohenine B, two medium sized ring containing natural products. The key step in the synthesis of these natural products was the photo-sensitised oxidative cleavage of an indolic substrate by molecular oxygen. Additionally, the use of residual dipolar coupling (RDC) analysis for the conformational analysis of these molecules in solution has been explored. Finally, the absolute configurational assignment of the natural products was established and their biological activities investigated

Fractionation and DOSY NMR as analytical tools : from model polymers to a technical lignin

This work was supported by EPSRC Ph.D. studentships (EP/ 1518175 (DMB) and EP/1654168 (JRDM)), the Industrial Biotechnology Innovation Centre (Ph.D. studentship to DMB), and an EPSRC Doctoral Prize Fellowship (CSL).One key challenge hindering the valorization of lignin is its structural complexity. Artificial lignin-like materials provide a stepping stone between the simplicity of model compounds and the complexity of lignin. Here, we report an optimized synthesis of an all-G β-O-4 polymer 1 designed to model softwood lignin. After acetylation, the polymer Ac-1(V) was fractionated using a protocol that involved only volatile organic solvents, which left no insoluble residue. Using diffusion ordered spectroscopy NMR in combination with gel permeation chromatography, it was revealed that this fractionated material behaved like a flexible linear polymer in solution (average α > 0.5). Acetylated kraft lignin was subsequently processed using the same fractionation protocol. By comparison with the model polymer, we propose that the acetylated kraft lignin is composed of two classes of materials that exhibit contrasting physical properties. One is comparable to the acetylated all-G β-O-4 polymer Ac-1, and the second has a significantly different macromolecular structure.Publisher PDFPeer reviewe

The Synthesis of Melohenine B and a Related Natural Product

A concise synthesis of melohenine B and O-ethyl-14-epimelohenine B, from eburnamonine, was achieved via a biomimetic diastereoselective singlet oxygen-mediated oxidative cleavage of the indole C2–C7 bond. These studies enabled the assignment of the absolute configuration of the natural products. In line with a proposed biosynthetic pathway, the resulting nine-membered ring containing products could be converted to the corresponding quinolones